J3_8VVV_028

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVV_028 not in the Motif Atlas

Geometric match to J3_8CRE_071

Geometric discrepancy: 0.1262

The information below is about J3_8CRE_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VVV|1|9|A|40
8VVV|1|9|G|41
*
8VVV|1|9|C|481
8VVV|1|9|G|482
8VVV|1|9|C|483
8VVV|1|9|A|484
8VVV|1|9|A|485
8VVV|1|9|A|486
8VVV|1|9|U|487
*
8VVV|1|9|A|512
8VVV|1|9|G|513
8VVV|1|9|U|514

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

uS4

Chain XX

uS12