J3_8VVV_030
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGG*UAAGAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 8VVV|1|9|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVV_030 not in the Motif Atlas
- Geometric match to J3_8CRE_074
- Geometric discrepancy: 0.1475
- The information below is about J3_8CRE_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VVV|1|9|U|682
8VVV|1|9|G|683
8VVV|1|9|G|684
*
8VVV|1|9|U|918
8VVV|1|9|A|919
8VVV|1|9|A|920
8VVV|1|9|G|921
8VVV|1|9|A|922
8VVV|1|9|G|923
*
8VVV|1|9|C|1019
8VVV|1|9|A|1020
8VVV|1|9|U|1021
8VVV|1|9|U|1022
8VVV|1|9|A|1023
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain HH
- eS7
- Chain LL
- uS17
- Chain NN
- uS15
- Chain WW
- uS8
- Chain XX
- uS12
- Chain bb
- eS27
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