J3_8VVV_039

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

8VVV|1|9|A|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVV_039 not in the Motif Atlas

Geometric match to J3_8CRE_083

Geometric discrepancy: 0.1654

The information below is about J3_8CRE_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8VVV|1|9|U|1350
8VVV|1|9|G|1351
*
8VVV|1|9|U|1360
8VVV|1|9|G|1361
8VVV|1|9|U|1362
8VVV|1|9|C|1363
*
8VVV|1|9|G|1375
8VVV|1|9|A|1376
8VVV|1|9|U|1377
8VVV|1|9|A|1378
8VVV|1|9|A|1379

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

uS2

Chain CC

eS1

Chain RR

eS17