J3_8VWQ_002
3D structure
- PDB id
- 8VWQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 8VWQ|1|1|A|504, 8VWQ|1|1|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VWQ_002 not in the Motif Atlas
- Geometric match to J3_5J7L_066
- Geometric discrepancy: 0.0569
- The information below is about J3_5J7L_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VWQ|1|1|G|30
8VWQ|1|1|C|31
*
8VWQ|1|1|G|474
8VWQ|1|1|C|475
8VWQ|1|1|G|476
8VWQ|1|1|A|477
8VWQ|1|1|A|478
8VWQ|1|1|A|479
8VWQ|1|1|A|480
8VWQ|1|1|G|481
8VWQ|1|1|A|482
8VWQ|1|1|A|483
8VWQ|1|1|C|484
*
8VWQ|1|1|G|496
8VWQ|1|1|A|497
8VWQ|1|1|G|498
8VWQ|1|1|U|499
8VWQ|1|1|G|500
8VWQ|1|1|A|501
8VWQ|1|1|A|502
8VWQ|1|1|A|503
8VWQ|1|1|A|504
8VWQ|1|1|A|505
8VWQ|1|1|G|506
8VWQ|1|1|A|507
8VWQ|1|1|A|508
8VWQ|1|1|C|509
8VWQ|1|1|C|510
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
Coloring options: