J3_8VWQ_022
3D structure
- PDB id
- 8VWQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 8VWQ|1|2|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VWQ_022 not in the Motif Atlas
- Geometric match to J3_5J7L_003
- Geometric discrepancy: 0.0841
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8VWQ|1|2|U|672
8VWQ|1|2|A|673
*
8VWQ|1|2|U|717
8VWQ|1|2|A|718
8VWQ|1|2|C|719
8VWQ|1|2|C|720
8VWQ|1|2|G|721
8VWQ|1|2|G|722
8VWQ|1|2|U|723
8VWQ|1|2|G|724
8VWQ|1|2|G|725
*
8VWQ|1|2|C|732
8VWQ|1|2|G|733
8VWQ|1|2|G|734
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain k
- 30S ribosomal protein S6
- Chain p
- 30S ribosomal protein S11
- Chain t
- Small ribosomal subunit protein uS15
- Chain w
- 30S ribosomal protein S18
- Chain z
- 30S ribosomal protein S21
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