J3_8VWQ_033

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8VWQ|1|2|U|1240, 8VWQ|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VWQ_033 not in the Motif Atlas

Geometric match to J3_8CRE_086

Geometric discrepancy: 0.1595

The information below is about J3_8CRE_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8VWQ|1|2|C|1237
8VWQ|1|2|A|1238
8VWQ|1|2|A|1239
8VWQ|1|2|U|1240
8VWQ|1|2|G|1241
*
8VWQ|1|2|C|1296
8VWQ|1|2|G|1297
8VWQ|1|2|U|1298
8VWQ|1|2|A|1299
8VWQ|1|2|G|1300
8VWQ|1|2|U|1301
8VWQ|1|2|C|1302
8VWQ|1|2|C|1303
*
8VWQ|1|2|G|1334
8VWQ|1|2|U|1335
8VWQ|1|2|C|1336
8VWQ|1|2|G|1337

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain r

30S ribosomal protein S13