J3_8W2N_034

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8W2N|1|2|U|1240, 8W2N|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8W2N_034 not in the Motif Atlas

Geometric match to J3_4LFB_009

Geometric discrepancy: 0.1505

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8W2N|1|2|C|1237
8W2N|1|2|A|1238
8W2N|1|2|A|1239
8W2N|1|2|U|1240
8W2N|1|2|G|1241
*
8W2N|1|2|C|1296
8W2N|1|2|G|1297
8W2N|1|2|U|1298
8W2N|1|2|A|1299
8W2N|1|2|G|1300
8W2N|1|2|U|1301
8W2N|1|2|C|1302
8W2N|1|2|C|1303
*
8W2N|1|2|G|1334
8W2N|1|2|U|1335
8W2N|1|2|C|1336
8W2N|1|2|G|1337

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 6

Elongation factor P

Chain l

30S ribosomal protein S7

Chain r

30S ribosomal protein S13