J3_8W51_002

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8W51_002 not in the Motif Atlas

Homologous match to J3_9DFE_008

Geometric discrepancy: 0.0568

The information below is about J3_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8W51|1|A|C|698
8W51|1|A|A|699
8W51|1|A|G|700
*
8W51|1|A|C|732
8W51|1|A|G|733
8W51|1|A|A|734
8W51|1|A|A|735
8W51|1|A|C|736
*
8W51|1|A|G|760
8W51|1|A|A|761
8W51|1|A|U|762
8W51|1|A|G|763

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2