J3_8WHX_009
3D structure
- PDB id
- 8WHX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 8WHX|1|A|A|2742, 8WHX|1|A|U|2743
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WHX_009 not in the Motif Atlas
- Homologous match to J3_7RQB_012
- Geometric discrepancy: 0.0773
- The information below is about J3_7RQB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.3
- Basepair signature
- cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8WHX|1|A|C|2741
8WHX|1|A|A|2742
8WHX|1|A|U|2743
8WHX|1|A|C|2744
*
8WHX|1|A|G|2769
8WHX|1|A|U|2770
8WHX|1|A|U|2771
*
8WHX|1|A|A|2785
8WHX|1|A|U|2786
8WHX|1|A|U|2787
8WHX|1|A|A|2788
8WHX|1|A|A|2789
8WHX|1|A|A|2790
8WHX|1|A|G|2791
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L14
Coloring options: