J3_8WHX_013

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WHX_013 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0641

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8WHX|1|a|C|918
8WHX|1|a|A|919
8WHX|1|a|A|920
8WHX|1|a|G|921
*
8WHX|1|a|C|1326
8WHX|1|a|U|1327
8WHX|1|a|A|1328
8WHX|1|a|G|1329
8WHX|1|a|U|1330
8WHX|1|a|A|1331
8WHX|1|a|A|1332
*
8WHX|1|a|U|1355
8WHX|1|a|G|1356
8WHX|1|a|A|1357
8WHX|1|a|A|1358
8WHX|1|a|U|1359
8WHX|1|a|A|1360
8WHX|1|a|C|1361
8WHX|1|a|G|1362

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S7

Chain j

30S ribosomal protein S9