3D structure

PDB id
8WHX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GC*GUGAAAAGUAC*GAGUGAAAGAGUACC
Length
28 nucleotides
Bulged bases
8WHX|1|A|G|591, 8WHX|1|A|A|595
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8WHX_022 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.1554
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8WHX|1|A|G|27
8WHX|1|A|C|28
*
8WHX|1|A|G|562
8WHX|1|A|U|563
8WHX|1|A|G|564
8WHX|1|A|A|565
8WHX|1|A|A|566
8WHX|1|A|A|567
8WHX|1|A|A|568
8WHX|1|A|G|569
8WHX|1|A|U|570
8WHX|1|A|A|571
8WHX|1|A|C|572
*
8WHX|1|A|G|583
8WHX|1|A|A|584
8WHX|1|A|G|585
8WHX|1|A|U|586
8WHX|1|A|G|587
8WHX|1|A|A|588
8WHX|1|A|A|589
8WHX|1|A|A|590
8WHX|1|A|G|591
8WHX|1|A|A|592
8WHX|1|A|G|593
8WHX|1|A|U|594
8WHX|1|A|A|595
8WHX|1|A|C|596
8WHX|1|A|C|597

Current chains

Chain A
23S rRNA

Nearby chains

Chain T
50S ribosomal protein L20
Chain V
50S ribosomal protein L22
Chain X
50S ribosomal protein L24

Coloring options:


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