J3_8WI7_019

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAUG*CUCAGUUC*GUCG

Length

17 nucleotides

Bulged bases

8WI7|1|a|U|1221, 8WI7|1|a|U|1284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WI7_019 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1242

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8WI7|1|a|C|1218
8WI7|1|a|A|1219
8WI7|1|a|A|1220
8WI7|1|a|U|1221
8WI7|1|a|G|1222
*
8WI7|1|a|C|1278
8WI7|1|a|U|1279
8WI7|1|a|C|1280
8WI7|1|a|A|1281
8WI7|1|a|G|1282
8WI7|1|a|U|1283
8WI7|1|a|U|1284
8WI7|1|a|C|1285
*
8WI7|1|a|G|1316
8WI7|1|a|U|1317
8WI7|1|a|C|1318
8WI7|1|a|G|1319

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S7

Chain n

30S ribosomal protein S13