J3_8WI7_025

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAA*UGCCGUAGAC*GGUAC

Length

20 nucleotides

Bulged bases

8WI7|1|A|U|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WI7_025 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1128

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8WI7|1|A|G|378
8WI7|1|A|G|379
8WI7|1|A|A|380
8WI7|1|A|A|381
8WI7|1|A|A|382
*
8WI7|1|A|U|398
8WI7|1|A|G|399
8WI7|1|A|C|400
8WI7|1|A|C|401
8WI7|1|A|G|402
8WI7|1|A|U|403
8WI7|1|A|A|404
8WI7|1|A|G|405
8WI7|1|A|A|406
8WI7|1|A|C|407
*
8WI7|1|A|G|419
8WI7|1|A|G|420
8WI7|1|A|U|421
8WI7|1|A|A|422
8WI7|1|A|C|423

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain X

50S ribosomal protein L24