J3_8WI9_013
3D structure
- PDB id
- 8WI9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UG*CACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 8WI9|1|a|U|703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WI9_013 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.2971
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8WI9|1|a|U|652
8WI9|1|a|G|653
*
8WI9|1|a|C|697
8WI9|1|a|A|698
8WI9|1|a|C|699
8WI9|1|a|C|700
8WI9|1|a|G|701
8WI9|1|a|G|702
8WI9|1|a|U|703
8WI9|1|a|G|704
8WI9|1|a|G|705
*
8WI9|1|a|C|712
8WI9|1|a|G|713
8WI9|1|a|G|714
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- 30S ribosomal protein S6
- Chain l
- 30S ribosomal protein S11
- Chain p
- 30S ribosomal protein S15
- Chain s
- 30S ribosomal protein S18B
- Chain w
- Ribosome hibernation promotion factor RafH
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