J3_8WI9_014

3D structure

PDB id

8WI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WI9_014 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.0795

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8WI9|1|a|C|918
8WI9|1|a|A|919
8WI9|1|a|A|920
8WI9|1|a|G|921
*
8WI9|1|a|C|1326
8WI9|1|a|U|1327
8WI9|1|a|A|1328
8WI9|1|a|G|1329
8WI9|1|a|U|1330
8WI9|1|a|A|1331
8WI9|1|a|A|1332
*
8WI9|1|a|U|1355
8WI9|1|a|G|1356
8WI9|1|a|A|1357
8WI9|1|a|A|1358
8WI9|1|a|U|1359
8WI9|1|a|A|1360
8WI9|1|a|C|1361
8WI9|1|a|G|1362

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S7

Chain j

30S ribosomal protein S9