J3_8WIB_014
3D structure
- PDB id
- 8WIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGGA*UAC*GGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WIB_014 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.0866
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8WIB|1|a|C|925
8WIB|1|a|G|926
8WIB|1|a|G|927
8WIB|1|a|A|928
*
8WIB|1|a|U|1216
8WIB|1|a|A|1217
8WIB|1|a|C|1218
*
8WIB|1|a|G|1319
8WIB|1|a|G|1320
8WIB|1|a|A|1321
8WIB|1|a|G|1322
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain C
- Transfer RNA; tRNA
- Chain j
- 30S ribosomal protein S9
- Chain n
- 30S ribosomal protein S13
- Chain w
- Ribosome hibernation promotion factor RafH
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