J3_8WIB_020

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAUG*CUCAGUUC*GUCG

Length

17 nucleotides

Bulged bases

8WIB|1|a|U|1221, 8WIB|1|a|U|1284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WIB_020 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1207

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8WIB|1|a|C|1218
8WIB|1|a|A|1219
8WIB|1|a|A|1220
8WIB|1|a|U|1221
8WIB|1|a|G|1222
*
8WIB|1|a|C|1278
8WIB|1|a|U|1279
8WIB|1|a|C|1280
8WIB|1|a|A|1281
8WIB|1|a|G|1282
8WIB|1|a|U|1283
8WIB|1|a|U|1284
8WIB|1|a|C|1285
*
8WIB|1|a|G|1316
8WIB|1|a|U|1317
8WIB|1|a|C|1318
8WIB|1|a|G|1319

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S7

Chain n

30S ribosomal protein S13