J3_8WIB_026

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAA*UGCCGUAGAC*GGUAC

Length

20 nucleotides

Bulged bases

8WIB|1|A|U|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WIB_026 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1141

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8WIB|1|A|G|378
8WIB|1|A|G|379
8WIB|1|A|A|380
8WIB|1|A|A|381
8WIB|1|A|A|382
*
8WIB|1|A|U|398
8WIB|1|A|G|399
8WIB|1|A|C|400
8WIB|1|A|C|401
8WIB|1|A|G|402
8WIB|1|A|U|403
8WIB|1|A|A|404
8WIB|1|A|G|405
8WIB|1|A|A|406
8WIB|1|A|C|407
*
8WIB|1|A|G|419
8WIB|1|A|G|420
8WIB|1|A|U|421
8WIB|1|A|A|422
8WIB|1|A|C|423

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain X

50S ribosomal protein L24