J3_8WID_002

3D structure

PDB id

8WID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WID_002 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0675

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8WID|1|a|C|918
8WID|1|a|A|919
8WID|1|a|A|920
8WID|1|a|G|921
*
8WID|1|a|C|1326
8WID|1|a|U|1327
8WID|1|a|A|1328
8WID|1|a|G|1329
8WID|1|a|U|1330
8WID|1|a|A|1331
8WID|1|a|A|1332
*
8WID|1|a|U|1355
8WID|1|a|G|1356
8WID|1|a|A|1357
8WID|1|a|A|1358
8WID|1|a|U|1359
8WID|1|a|A|1360
8WID|1|a|C|1361
8WID|1|a|G|1362

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

Transfer RNA; tRNA

Chain h

30S ribosomal protein S7

Chain j

30S ribosomal protein S9