J3_8WID_005

3D structure

PDB id

8WID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUG*CAG*CUUAUG

Length

13 nucleotides

Bulged bases

8WID|1|a|U|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WID_005 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.156

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

8WID|1|a|U|972
8WID|1|a|U|973
8WID|1|a|U|974
8WID|1|a|G|975
*
8WID|1|a|C|1025
8WID|1|a|A|1026
8WID|1|a|G|1027
*
8WID|1|a|C|1191
8WID|1|a|U|1192
8WID|1|a|U|1193
8WID|1|a|A|1194
8WID|1|a|U|1195
8WID|1|a|G|1196

Current chains

Chain a

16S rRNA

Nearby chains

Chain o

30S ribosomal protein S14A