J3_8WID_007
3D structure
- PDB id
- 8WID (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WID_007 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.0993
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8WID|1|a|C|1043
8WID|1|a|G|1044
8WID|1|a|U|1045
8WID|1|a|C|1046
8WID|1|a|A|1047
8WID|1|a|G|1048
*
8WID|1|a|C|1087
8WID|1|a|G|1088
8WID|1|a|C|1089
8WID|1|a|A|1090
8WID|1|a|A|1091
8WID|1|a|C|1092
8WID|1|a|C|1093
*
8WID|1|a|G|1168
8WID|1|a|A|1169
8WID|1|a|U|1170
8WID|1|a|G|1171
8WID|1|a|A|1172
8WID|1|a|C|1173
8WID|1|a|G|1174
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- 30S ribosomal protein S3
- Chain f
- 30S ribosomal protein S5
- Chain h
- 30S ribosomal protein S7
- Chain j
- 30S ribosomal protein S9
- Chain k
- 30S ribosomal protein S10
- Chain o
- 30S ribosomal protein S14A
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