J3_8WIF_005

3D structure

PDB id

8WIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUG*CAG*CUUAUG

Length

13 nucleotides

Bulged bases

8WIF|1|a|U|1195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WIF_005 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1576

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8WIF|1|a|U|972
8WIF|1|a|U|973
8WIF|1|a|U|974
8WIF|1|a|G|975
*
8WIF|1|a|C|1025
8WIF|1|a|A|1026
8WIF|1|a|G|1027
*
8WIF|1|a|C|1191
8WIF|1|a|U|1192
8WIF|1|a|U|1193
8WIF|1|a|A|1194
8WIF|1|a|U|1195
8WIF|1|a|G|1196

Current chains

Chain a

16S rRNA

Nearby chains

Chain o

30S ribosomal protein S14A