J3_8WIF_013
3D structure
- PDB id
- 8WIF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 8WIF|1|a|A|633
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WIF_013 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.0955
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8WIF|1|a|U|566
8WIF|1|a|G|567
8WIF|1|a|G|568
*
8WIF|1|a|C|631
8WIF|1|a|U|632
8WIF|1|a|A|633
8WIF|1|a|G|634
8WIF|1|a|A|635
*
8WIF|1|a|U|731
8WIF|1|a|G|732
8WIF|1|a|A|733
8WIF|1|a|C|734
8WIF|1|a|G|735
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain i
- 30S ribosomal protein S8
- Chain m
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S15
- Chain r
- 30S ribosomal protein S17
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