J3_8WV1_006

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CGAGCUA*UAGGA*UAACCGAG

Length

20 nucleotides

Bulged bases

8WV1|1|A|G|733, 8WV1|1|A|A|835, 8WV1|1|A|A|836, 8WV1|1|A|C|837, 8WV1|1|A|G|839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WV1|1|A|C|730
8WV1|1|A|G|731
8WV1|1|A|A|732
8WV1|1|A|G|733
8WV1|1|A|C|734
8WV1|1|A|U|735
8WV1|1|A|A|736
*
8WV1|1|A|U|820
8WV1|1|A|A|821
8WV1|1|A|G|822
8WV1|1|A|G|823
8WV1|1|A|A|824
*
8WV1|1|A|U|834
8WV1|1|A|A|835
8WV1|1|A|A|836
8WV1|1|A|C|837
8WV1|1|A|C|838
8WV1|1|A|G|839
8WV1|1|A|A|840
8WV1|1|A|G|841

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain E

50S ribosomal protein L4

Chain R

50S ribosomal protein L22