J3_8WV1_014
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- GCCC*GGCCUAGUGAACC*GAUCAAC
- Length
- 24 nucleotides
- Bulged bases
- 8WV1|1|A|U|2402, 8WV1|1|A|A|2438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WV1_014 not in the Motif Atlas
- Homologous match to J3_4WF9_019
- Geometric discrepancy: 0.2017
- The information below is about J3_4WF9_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-F-F-F-F-F-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8WV1|1|A|G|2294
8WV1|1|A|C|2295
8WV1|1|A|C|2296
8WV1|1|A|C|2297
*
8WV1|1|A|G|2395
8WV1|1|A|G|2396
8WV1|1|A|C|2397
8WV1|1|A|C|2398
8WV1|1|A|U|2399
8WV1|1|A|A|2400
8WV1|1|A|G|2401
8WV1|1|A|U|2402
8WV1|1|A|G|2403
8WV1|1|A|A|2404
8WV1|1|A|A|2405
8WV1|1|A|C|2406
8WV1|1|A|C|2407
*
8WV1|1|A|G|2433
8WV1|1|A|A|2434
8WV1|1|A|U|2435
8WV1|1|A|C|2436
8WV1|1|A|A|2437
8WV1|1|A|A|2438
8WV1|1|A|C|2439
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 13
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain K
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L25
- Chain V
- Large ribosomal subunit protein bL27
- Chain W
- Large ribosomal subunit protein bL28
Coloring options: