J3_8WV1_018
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- CCCAUAG*CG*UCGG
- Length
- 13 nucleotides
- Bulged bases
- 8WV1|1|B|U|14, 8WV1|1|B|C|109
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WV1_018 not in the Motif Atlas
- Homologous match to J3_7A0S_021
- Geometric discrepancy: 0.3575
- The information below is about J3_7A0S_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47324.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8WV1|1|B|C|10
8WV1|1|B|C|11
8WV1|1|B|C|12
8WV1|1|B|A|13
8WV1|1|B|U|14
8WV1|1|B|A|15
8WV1|1|B|G|16
*
8WV1|1|B|C|68
8WV1|1|B|G|69
*
8WV1|1|B|U|108
8WV1|1|B|C|109
8WV1|1|B|G|110
8WV1|1|B|G|111
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- 50S ribosomal protein L18
- Chain U
- 50S ribosomal protein L25
- Chain V
- Large ribosomal subunit protein bL27
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