J3_8WV1_022
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- AC*GAUAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 8WV1|1|a|U|71, 8WV1|1|a|A|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WV1_022 not in the Motif Atlas
- Homologous match to J3_9DFE_004
- Geometric discrepancy: 0.1533
- The information below is about J3_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
8WV1|1|a|A|55
8WV1|1|a|C|56
*
8WV1|1|a|G|69
8WV1|1|a|A|70
8WV1|1|a|U|71
8WV1|1|a|A|72
8WV1|1|a|A|73
8WV1|1|a|G|74
8WV1|1|a|C|75
*
8WV1|1|a|G|108
8WV1|1|a|A|109
8WV1|1|a|U|110
8WV1|1|a|G|111
8WV1|1|a|U|112
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 7
- 50S ribosomal protein L34
- Chain s
- 50S ribosomal protein L23
- Chain x
- Large ribosomal subunit protein uL29
Coloring options: