J3_8WV1_033
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- CUC*GAG*UAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 8WV1|1|a|G|2346, 8WV1|1|a|A|2348
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WV1_033 not in the Motif Atlas
- Homologous match to J3_9DFE_016
- Geometric discrepancy: 0.1834
- The information below is about J3_9DFE_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8WV1|1|a|C|2307
8WV1|1|a|U|2308
8WV1|1|a|C|2309
*
8WV1|1|a|G|2333
8WV1|1|a|A|2334
8WV1|1|a|G|2335
*
8WV1|1|a|U|2344
8WV1|1|a|A|2345
8WV1|1|a|G|2346
8WV1|1|a|A|2347
8WV1|1|a|A|2348
8WV1|1|a|G|2349
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain f
- 50S ribosomal protein L5
- Chain n
- 50S ribosomal protein L18
- Chain v
- Large ribosomal subunit protein bL27
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