J3_8XSX_007

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8XSX|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSX|1|L5|A|2551
8XSX|1|L5|G|2552
8XSX|1|L5|A|2553
8XSX|1|L5|U|2554
8XSX|1|L5|G|2555
*
8XSX|1|L5|C|2572
8XSX|1|L5|A|2573
8XSX|1|L5|G|2574
8XSX|1|L5|U|2575
*
8XSX|1|L5|A|2757
8XSX|1|L5|G|2758
8XSX|1|L5|G|2759
8XSX|1|L5|G|2760
8XSX|1|L5|U|2761
8XSX|1|L5|G|2762
8XSX|1|L5|U|2763
8XSX|1|L5|A|2764
8XSX|1|L5|A|2765
8XSX|1|L5|A|2766
8XSX|1|L5|U|2767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27