J3_8XSX_008

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XSX_008 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.1358

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8XSX|1|L5|C|3937
8XSX|1|L5|G|3938
8XSX|1|L5|G|3939
*
8XSX|1|L5|C|4074
8XSX|1|L5|U|4075
8XSX|1|L5|G|4076
8XSX|1|L5|A|4077
8XSX|1|L5|C|4078
*
8XSX|1|L5|G|4168
8XSX|1|L5|G|4169
8XSX|1|L5|A|4170
8XSX|1|L5|C|4171
8XSX|1|L5|A|4172
8XSX|1|L5|G|4173

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15