3D structure

PDB id
8XSX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UCUUAG*CGAGAC*GCAAUA
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8XSX_021 not in the Motif Atlas
Homologous match to J3_8P9A_080
Geometric discrepancy: 0.4455
The information below is about J3_8P9A_080
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17077.1
Basepair signature
cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8XSX|1|S2|U|1340
8XSX|1|S2|C|1341
8XSX|1|S2|U|1342
8XSX|1|S2|U|1343
8XSX|1|S2|A|1344
8XSX|1|S2|G|1345
*
8XSX|1|S2|C|1384
8XSX|1|S2|G|1385
8XSX|1|S2|A|1386
8XSX|1|S2|G|1387
8XSX|1|S2|A|1388
8XSX|1|S2|C|1389
*
8XSX|1|S2|G|1481
8XSX|1|S2|C|1482
8XSX|1|S2|A|1483
8XSX|1|S2|A|1484
8XSX|1|S2|U|1485
8XSX|1|S2|A|1486

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SC
40S ribosomal protein S2
Chain SD
40S ribosomal protein S3
Chain SQ
40S ribosomal protein S16
Chain SR
40S ribosomal protein S17
Chain SU
40S ribosomal protein S20
Chain Sd
40S ribosomal protein S29

Coloring options:


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