J3_8XSX_035

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XSX_035 not in the Motif Atlas

Homologous match to J3_8C3A_055

Geometric discrepancy: 0.1492

The information below is about J3_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10980.1

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8XSX|1|L5|A|2598
8XSX|1|L5|G|2599
8XSX|1|L5|A|2600
8XSX|1|L5|A|2601
8XSX|1|L5|G|2602
*
8XSX|1|L5|C|2737
8XSX|1|L5|C|2738
*
8XSX|1|L5|G|2742
8XSX|1|L5|A|2743
8XSX|1|L5|A|2744
8XSX|1|L5|A|2745
8XSX|1|L5|A|2746
8XSX|1|L5|U|2747

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a