3D structure

PDB id
8XSX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
AGAUUAAG*CGCGCAAAU*AGU
Length
20 nucleotides
Bulged bases
8XSX|1|S2|A|46
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8XSX_041 not in the Motif Atlas
Homologous match to J3_8P9A_069
Geometric discrepancy: 0.0444
The information below is about J3_8P9A_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_63856.1
Basepair signature
cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
Number of instances in this motif group
5

Unit IDs

8XSX|1|S2|A|40
8XSX|1|S2|G|41
8XSX|1|S2|A|42
8XSX|1|S2|U|43
8XSX|1|S2|U|44
8XSX|1|S2|A|45
8XSX|1|S2|A|46
8XSX|1|S2|G|47
*
8XSX|1|S2|C|479
8XSX|1|S2|G|480
8XSX|1|S2|C|481
8XSX|1|S2|G|482
8XSX|1|S2|C|483
8XSX|1|S2|A|484
8XSX|1|S2|A|485
8XSX|1|S2|A|486
8XSX|1|S2|U|487
*
8XSX|1|S2|A|512
8XSX|1|S2|G|513
8XSX|1|S2|U|514

Current chains

Chain S2
18S rRNA

Nearby chains

Chain CB
Elongation factor 2
Chain SJ
40S ribosomal protein S9
Chain SX
40S ribosomal protein S23

Coloring options:


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