J3_8XSY_001
3D structure
- PDB id
- 8XSY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAGCG*CGUACG*CCGG
- Length
- 15 nucleotides
- Bulged bases
- 8XSY|1|L5|C|159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8XSY|1|L5|C|112
8XSY|1|L5|A|113
8XSY|1|L5|G|114
8XSY|1|L5|C|115
8XSY|1|L5|G|116
*
8XSY|1|L5|C|155
8XSY|1|L5|G|156
8XSY|1|L5|U|157
8XSY|1|L5|A|158
8XSY|1|L5|C|159
8XSY|1|L5|G|160
*
8XSY|1|L5|C|275
8XSY|1|L5|C|276
8XSY|1|L5|G|277
8XSY|1|L5|G|278
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L7a
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- 60S ribosomal protein L15
- Chain Lh
- 60S ribosomal protein L35
- Chain Li
- 60S ribosomal protein L36
Coloring options: