J3_8XSY_005

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8XSY|1|L5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XSY_005 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0733

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8XSY|1|L5|C|2393
8XSY|1|L5|G|2394
8XSY|1|L5|A|2395
8XSY|1|L5|A|2396
8XSY|1|L5|G|2397
8XSY|1|L5|U|2398
8XSY|1|L5|G|2399
*
8XSY|1|L5|C|2805
8XSY|1|L5|A|2806
8XSY|1|L5|A|2807
*
8XSY|1|L5|U|2819
8XSY|1|L5|C|2820
8XSY|1|L5|U|2821
8XSY|1|L5|G|2822

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34