J3_8XSY_007

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8XSY|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSY|1|L5|A|2551
8XSY|1|L5|G|2552
8XSY|1|L5|A|2553
8XSY|1|L5|U|2554
8XSY|1|L5|G|2555
*
8XSY|1|L5|C|2572
8XSY|1|L5|A|2573
8XSY|1|L5|G|2574
8XSY|1|L5|U|2575
*
8XSY|1|L5|A|2757
8XSY|1|L5|G|2758
8XSY|1|L5|G|2759
8XSY|1|L5|G|2760
8XSY|1|L5|U|2761
8XSY|1|L5|G|2762
8XSY|1|L5|U|2763
8XSY|1|L5|A|2764
8XSY|1|L5|A|2765
8XSY|1|L5|A|2766
8XSY|1|L5|U|2767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27