J3_8XSY_020
3D structure
- PDB id
- 8XSY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8XSY_020 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1102
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8XSY|1|S2|U|1340
8XSY|1|S2|C|1341
8XSY|1|S2|U|1342
8XSY|1|S2|U|1343
8XSY|1|S2|A|1344
8XSY|1|S2|G|1345
*
8XSY|1|S2|C|1384
8XSY|1|S2|G|1385
8XSY|1|S2|A|1386
8XSY|1|S2|G|1387
8XSY|1|S2|A|1388
8XSY|1|S2|C|1389
*
8XSY|1|S2|G|1481
8XSY|1|S2|C|1482
8XSY|1|S2|A|1483
8XSY|1|S2|A|1484
8XSY|1|S2|U|1485
8XSY|1|S2|A|1486
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SD
- 40S ribosomal protein S3
- Chain SQ
- 40S ribosomal protein S16
- Chain SR
- 40S ribosomal protein S17
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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