J3_8XSZ_007

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSZ|1|L5|A|2551
8XSZ|1|L5|G|2552
8XSZ|1|L5|A|2553
8XSZ|1|L5|U|2554
8XSZ|1|L5|G|2555
*
8XSZ|1|L5|C|2572
8XSZ|1|L5|A|2573
8XSZ|1|L5|G|2574
8XSZ|1|L5|U|2575
*
8XSZ|1|L5|A|2757
8XSZ|1|L5|G|2758
8XSZ|1|L5|G|2759
8XSZ|1|L5|G|2760
8XSZ|1|L5|U|2761
8XSZ|1|L5|G|2762
8XSZ|1|L5|U|2763
8XSZ|1|L5|A|2764
8XSZ|1|L5|A|2765
8XSZ|1|L5|A|2766
8XSZ|1|L5|U|2767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27