J3_8XSZ_034

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XSZ_034 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.16

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

8XSZ|1|L5|A|2598
8XSZ|1|L5|G|2599
8XSZ|1|L5|A|2600
8XSZ|1|L5|A|2601
8XSZ|1|L5|G|2602
*
8XSZ|1|L5|C|2737
8XSZ|1|L5|C|2738
*
8XSZ|1|L5|G|2742
8XSZ|1|L5|A|2743
8XSZ|1|L5|A|2744
8XSZ|1|L5|A|2745
8XSZ|1|L5|A|2746
8XSZ|1|L5|U|2747

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a