J3_8XT0_001

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

8XT0|1|L1|G|248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XT0_001 not in the Motif Atlas

Homologous match to J3_4WF9_002

Geometric discrepancy: 0.1375

The information below is about J3_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

8XT0|1|L1|C|245
8XT0|1|L1|G|246
8XT0|1|L1|A|247
8XT0|1|L1|G|248
8XT0|1|L1|C|249
8XT0|1|L1|U|250
8XT0|1|L1|A|251
*
8XT0|1|L1|U|313
8XT0|1|L1|A|314
8XT0|1|L1|G|315
*
8XT0|1|L1|C|331
8XT0|1|L1|G|332
8XT0|1|L1|A|333
8XT0|1|L1|G|334

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain Lh

Large ribosomal subunit protein bL34m

Chain Lo

Large ribosomal subunit protein mL41