J3_8XT0_002

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CACAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XT0_002 not in the Motif Atlas

Homologous match to J3_8VTW_002

Geometric discrepancy: 0.1444

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8XT0|1|L1|C|260
8XT0|1|L1|A|261
8XT0|1|L1|G|262
*
8XT0|1|L1|C|272
8XT0|1|L1|A|273
8XT0|1|L1|C|274
8XT0|1|L1|A|275
8XT0|1|L1|C|276
*
8XT0|1|L1|G|300
8XT0|1|L1|A|301
8XT0|1|L1|A|302
8XT0|1|L1|G|303

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain Lk

Large ribosomal subunit protein mL37