J3_8XT0_005

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8XT0|1|L1|A|1335, 8XT0|1|L1|U|1336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XT0_005 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.082

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

8XT0|1|L1|C|1334
8XT0|1|L1|A|1335
8XT0|1|L1|U|1336
8XT0|1|L1|C|1337
*
8XT0|1|L1|G|1362
8XT0|1|L1|U|1363
8XT0|1|L1|U|1364
*
8XT0|1|L1|A|1378
8XT0|1|L1|U|1379
8XT0|1|L1|U|1380
8XT0|1|L1|A|1381
8XT0|1|L1|A|1382
8XT0|1|L1|A|1383
8XT0|1|L1|G|1384

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL3m

Chain LN

Large ribosomal subunit protein uL14m

Chain SR

Large ribosomal subunit protein mL66