J3_8XT2_001

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

8XT2|1|L1|G|248, 8XT2|1|L1|G|332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XT2_001 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.2451

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8XT2|1|L1|C|245
8XT2|1|L1|G|246
8XT2|1|L1|A|247
8XT2|1|L1|G|248
8XT2|1|L1|C|249
8XT2|1|L1|U|250
8XT2|1|L1|A|251
*
8XT2|1|L1|U|313
8XT2|1|L1|A|314
8XT2|1|L1|G|315
*
8XT2|1|L1|C|331
8XT2|1|L1|G|332
8XT2|1|L1|A|333
8XT2|1|L1|G|334

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain Lh

Large ribosomal subunit protein bL34m

Chain Lo

Large ribosomal subunit protein mL41