J3_8XT3_001

3D structure

PDB id

8XT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

8XT3|1|L1|G|248, 8XT3|1|L1|G|332, 8XT3|1|L1|A|333

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XT3_001 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1222

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

8XT3|1|L1|C|245
8XT3|1|L1|G|246
8XT3|1|L1|A|247
8XT3|1|L1|G|248
8XT3|1|L1|C|249
8XT3|1|L1|U|250
8XT3|1|L1|A|251
*
8XT3|1|L1|U|313
8XT3|1|L1|A|314
8XT3|1|L1|G|315
*
8XT3|1|L1|C|331
8XT3|1|L1|G|332
8XT3|1|L1|A|333
8XT3|1|L1|G|334

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain Lh

Large ribosomal subunit protein bL34m

Chain Lo

Large ribosomal subunit protein mL41