J3_8XT3_003

3D structure

PDB id

8XT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAAGCCUG*CAACC*GCA

Length

16 nucleotides

Bulged bases

8XT3|1|L1|A|755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT3|1|L1|U|666
8XT3|1|L1|A|667
8XT3|1|L1|A|668
8XT3|1|L1|G|669
8XT3|1|L1|C|670
8XT3|1|L1|C|671
8XT3|1|L1|U|672
8XT3|1|L1|G|673
*
8XT3|1|L1|C|753
8XT3|1|L1|A|754
8XT3|1|L1|A|755
8XT3|1|L1|C|756
8XT3|1|L1|C|757
*
8XT3|1|L1|G|766
8XT3|1|L1|C|767
8XT3|1|L1|A|768

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LW

Large ribosomal subunit protein uL23m

Chain Lh

Large ribosomal subunit protein bL34m

Chain Lo

Large ribosomal subunit protein mL41

Chain Sf

Large ribosomal subunit protein mL65