J3_8XU8_008

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XU8_008 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.2755

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8XU8|1|2|C|1161
8XU8|1|2|C|1162
8XU8|1|2|A|1163
8XU8|1|2|G|1164
*
8XU8|1|2|C|1581
8XU8|1|2|U|1582
8XU8|1|2|A|1583
8XU8|1|2|G|1584
8XU8|1|2|U|1585
8XU8|1|2|A|1586
8XU8|1|2|A|1587
*
8XU8|1|2|U|1609
8XU8|1|2|G|1610
8XU8|1|2|A|1611
8XU8|1|2|U|1612
8XU8|1|2|U|1613
8XU8|1|2|A|1614
8XU8|1|2|C|1615
8XU8|1|2|G|1616

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SB

Small ribosomal subunit protein uS7

Chain SF

Small ribosomal subunit protein uS9A

Chain SL

Small ribosomal subunit protein eS28A