J3_8XU8_025

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8XU8_025 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.1648

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

8XU8|1|A|G|1230
8XU8|1|A|A|1231
8XU8|1|A|C|1232
*
8XU8|1|A|G|1256
8XU8|1|A|C|1257
8XU8|1|A|U|1258
8XU8|1|A|A|1259
8XU8|1|A|A|1260
8XU8|1|A|G|1261
8XU8|1|A|G|1262
*
8XU8|1|A|C|1277
8XU8|1|A|A|1278
8XU8|1|A|C|1279

Current chains

Chain A

25S rRNA

Nearby chains