J3_8XU8_027
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8XU8|1|A|U|1840, 8XU8|1|A|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8XU8_027 not in the Motif Atlas
- Homologous match to J3_8P9A_054
- Geometric discrepancy: 0.1099
- The information below is about J3_8P9A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.1
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8XU8|1|A|G|1488
8XU8|1|A|A|1489
8XU8|1|A|A|1490
8XU8|1|A|A|1491
*
8XU8|1|A|U|1837
8XU8|1|A|G|1838
8XU8|1|A|A|1839
8XU8|1|A|U|1840
8XU8|1|A|A|1841
8XU8|1|A|A|1842
8XU8|1|A|C|1843
*
8XU8|1|A|G|1852
8XU8|1|A|U|1853
8XU8|1|A|C|1854
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain i
- Large ribosomal subunit protein eL34A
- Chain l
- Large ribosomal subunit protein eL37A
- Chain n
- Large ribosomal subunit protein eL39
Coloring options: