J3_8XU8_032
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8XU8_032 not in the Motif Atlas
- Homologous match to J3_8P9A_059
- Geometric discrepancy: 0.3412
- The information below is about J3_8P9A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89060.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-tWH-tHS-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8XU8|1|A|A|2432
8XU8|1|A|U|2433
8XU8|1|A|U|2434
8XU8|1|A|G|2435
*
8XU8|1|A|C|2512
8XU8|1|A|U|2513
8XU8|1|A|U|2514
8XU8|1|A|A|2515
8XU8|1|A|U|2516
8XU8|1|A|U|2517
*
8XU8|1|A|A|2590
8XU8|1|A|A|2591
8XU8|1|A|G|2592
8XU8|1|A|A|2593
8XU8|1|A|C|2594
8XU8|1|A|A|2595
8XU8|1|A|U|2596
8XU8|1|A|U|2597
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL2A
- Chain J
- Large ribosomal subunit protein eL8A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain k
- Large ribosomal subunit protein eL36A
Coloring options: