J3_8XU8_034
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 8XU8|1|A|A|2758, 8XU8|1|A|U|2759, 8XU8|1|A|C|2760, 8XU8|1|A|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8XU8_034 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.1057
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8XU8|1|A|G|2651
8XU8|1|A|U|2652
8XU8|1|A|C|2653
*
8XU8|1|A|G|2754
8XU8|1|A|C|2755
8XU8|1|A|C|2756
8XU8|1|A|U|2757
8XU8|1|A|A|2758
8XU8|1|A|U|2759
8XU8|1|A|C|2760
8XU8|1|A|G|2761
8XU8|1|A|A|2762
8XU8|1|A|U|2763
8XU8|1|A|C|2764
8XU8|1|A|C|2765
*
8XU8|1|A|G|2793
8XU8|1|A|G|2794
8XU8|1|A|U|2795
8XU8|1|A|G|2796
8XU8|1|A|C|2797
8XU8|1|A|C|2798
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain S
- Large ribosomal subunit protein eL18A
- Chain V
- Large ribosomal subunit protein eL21A
- Chain c
- Large ribosomal subunit protein uL15
- Chain q
- Large ribosomal subunit protein eL42A
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